Load your sequences in fasta format.Ĭhoose alignment parameters by selecting: Alignment/Alignment parameters/Multiple Alignment Parameters/Īlign the sequences by selecting : Alignment/Do complete alignment/ You can choose a name for the output file. Bioinformatics 23: 2947–2948.Īt, follow the links to ClustalX. Allow the application to access your computer.Ĭlose the example windows shown. This program will here simply be used to look at a sequence alignment created by other command line programs.Ĭlick on the “Launch Jalview Desktop” top right corner, and click “Open with Java Web Start”. Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. You will find here the exact commands I used, but every user is welcome to modify them according to their operating system. I have not tried any other operating system. I have been able to install the following programs on a Mac OS X 10.6.8 (64 bit).
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